Steve, seems like my windshield is a little thicker than .090 but would have to look it up. You should see an increase in cruise speeds after the 912S is installed. Also an increase in fuel burn.
We are not sure exactly why my 4 , and Mike Gibbs, got the speeds we did. I really think it has something to do with the wide body mod. but can't quantify that not having wind tunnel access. Obviously wheel pants could help a little but I enjoy landing on desert strips and grass strips so no pants for me at this time. Maybe a radiator scoop would be nice but mine works even here in the desert summer heat. My cowling intakes are probably too big also. I think there is a lot of drag to be reduced inside the cowling if baffling was used to clean up the flow over the engine. I can imagine several ways to eek out a couple more mph's however my 4 now is one of the fastest in our 'group' so I can keep up the way it is. I used to have the slowest Kitfox in the bunch and that was more frustrating especially on cross country trips. I guess what i'm saying is i'm out of the building mode and into the flying mode.
Good luck with the engine swap and let us know the results.