Skot,
You have a couple of issues to deal with.
1st, if I recall, you bought the aircraft used. Did you ever obtain a repairmans certificate for it? If so, you can sign off on the changes. If not you will need an AP to sign off. Once you have that sorted out -
2nd, you need to read the operating limitations in your Airworthiness Certificate. Likely it is worded ambiguously enough to prompt a call to your local FSDO for clarification.
If they consider the changes substantial enough (likely) they will also (likely) require a new condition inspection and a new phase one flight testing for a certain number of hours. With a new condition inspection a new weight and balance could be required.
Changing an engine (even of same type) and adding accessories that weren't there before - will (likely) prompt any FSDO to require the above, but as we know, they all don't all interpret what is written the same, so it is best to check with them first.
Greg